Ruminococcus sp. AF16-50

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF16-50 is a Gram-positive bacterium characterized by its cocci shape. This species possesses flagella, which suggests a capability for motility that may play a role in its ecological niche. Genetically, Ruminococcus sp. AF16-50 contains a single replicon, indicating a streamlined genomic organization that is typical for many bacteria, potentially enhancing its adaptability and efficiency in nutrient utilization. The accessions available for Ruminococcus sp. AF16-50, particularly QTXD00000000.1, provide a basis for further genomic and functional analysis. As a member of the genus Ruminococcus, this species is likely involved in the fermentation of complex carbohydrates, contributing to the breakdown of fibrous plant materials, which is essential in the digestive processes of ruminant animals. Ecologically, Ruminococcus sp. AF16-50 may play a significant role in the gut microbiota, particularly in environments rich in plant material. Its ability to degrade polysaccharides can influence nutrient cycling and energy flow within microbial communities. Understanding its specific functions and interactions within the microbiome could shed light on its contributions to host health and the overall dynamics of microbial ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF16-50
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF16-50
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF16-50 AF16-50.Scaf76, whole genome shotgun

Gene Summary

Adenine Count

859822 bp

Thymine Count

843830 bp

Guanine Count

651154 bp

Cytosine Count

623754 bp

Genome Length

2979912 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonucleaseDWW71_00240Not AvailableNegative57564 - 5890750804.6
plasmid mobilization relaxosome protein mobcDWW71_00245Not AvailableNegative58868 - 5919712896.6
xre family transcriptional regulatorDWW71_00250Not AvailableNegative59392 - 5976013730.7
dna-binding proteinDWW71_00255Not AvailablePositive59902 - 600816846.4
dna-binding response regulatorDWW71_00260Not AvailablePositive60132 - 6081525658.0
sensor histidine kinaseDWW71_00265Not AvailablePositive60812 - 6184338645.3
abc transporter atp-binding proteinDWW71_00270Not AvailablePositive61937 - 6260224233.4
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive62539 - 62885Not Available
abc transporter permeaseDWW71_00275Not AvailablePositive62618 - 6512892801.3
sigma-70 family rna polymerase sigma factorDWW71_00285Not AvailablePositive65758 - 6619216754.2

Displaying genes 161 – 170 of 2774 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.