Ruminococcus sp. AF17-11

Gram-positiveCocci

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. AF17-11 is a Gram-positive bacterium characterized by its cocci shape. One notable feature of this organism is the presence of flagella, which may contribute to its motility within its ecological niche. The genome of Ruminococcus sp. AF17-11 is organized into a single replicon, suggesting a streamlined genetic architecture that might be advantageous for its adaptation and survival. The accession number for this strain is QTXC00000000.1, which provides a reference for its genetic sequence and further study. Ruminococcus species are commonly found in the gastrointestinal tracts of ruminants and play a critical role in the fermentation of plant materials, facilitating the breakdown of complex carbohydrates. In terms of ecological significance, Ruminococcus sp. AF17-11 likely participates in the digestion processes of herbivorous animals, contributing to nutrient cycling and energy availability within its habitat. The presence of flagella could enhance its ability to navigate the gut environment, potentially allowing it to access various substrates and interact with other microbial communities. This motility may also play a role in colonization and persistence within the gastrointestinal tract, highlighting the importance of such traits in microbial ecology and host-microbe interactions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. AF17-11
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. AF17-11
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus sp. AF17-11 AF17-11.Scaf25, whole genome shotgun

Gene Summary

Adenine Count

685084 bp

Thymine Count

662183 bp

Guanine Count

474916 bp

Cytosine Count

448743 bp

Genome Length

2271102 bp

Protein-coding Genes

2044 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate-semialdehyde dehydrogenaseDWW75_09815Not AvailablePositive2034866 - 203595140252.4
4-hydroxy-tetrahydrodipicolinate synthaseDWW75_09820Not AvailablePositive2035971 - 203687332525.1
4-hydroxy-tetrahydrodipicolinate reductaseDWW75_09825Not AvailablePositive2036922 - 203768627724.9
duf3343 domain-containing proteinDWW75_09830Not AvailablePositive2037816 - 20380438217.18
aminotransferase class v-fold plp-dependent enzymeDWW75_09835Not AvailablePositive2038040 - 203920642437.0
tigr00159 family proteinDWW75_09840Not AvailablePositive2039240 - 204017234720.8
hypothetical proteinDWW75_09845Not AvailablePositive2040169 - 204142845051.5
rod shape-determining protein rodaDWW75_09850Not AvailableNegative2041483 - 204265243287.6
formate--tetrahydrofolate ligaseDWW75_09855Not AvailablePositive2042796 - 204446359068.6
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeDWW75_09860Not AvailablePositive2044465 - 204488715603.3

Displaying genes 1941 – 1950 of 2152 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.