Bacteroides sp. AM30-16

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. AM30-16 is a rod-shaped bacterium characterized by the presence of flagella. This motility feature may enhance its ability to navigate within complex environments, such as the gastrointestinal tract of various hosts. The bacterium has been documented with a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptability to its ecological niche. The genome of Bacteroides sp. AM30-16 is accessible through the accession number QTNI00000000.1, providing researchers with a resource for further genomic studies and characterization. Bacteroides species are known to play significant roles in the human gut microbiome, contributing to the breakdown of complex carbohydrates and influencing host metabolism. The presence of flagella in Bacteroides sp. AM30-16 suggests a potential ecological advantage in competing for resources and colonizing specific niches within the gut environment. This motility could allow the bacterium to establish itself effectively among other microbial communities, underscoring the dynamic interactions that occur in the gut microbiome. Thus, Bacteroides sp. AM30-16 may play a crucial role in maintaining gut health and influencing host physiology through its metabolic activities and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. AM30-16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. AM30-16 AM30-16.Scaf61, whole genome shotgun

Gene Summary

Adenine Count

1247972 bp

Thymine Count

1263355 bp

Guanine Count

1085547 bp

Cytosine Count

1086417 bp

Genome Length

4683741 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l33DW777_00960Not AvailableNegative204550 - 2047387211.91
50s ribosomal protein l28DW777_00965Not AvailableNegative204759 - 2050199759.05
cina family proteinDW777_00970Not AvailableNegative205141 - 20560816241.8
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadDW777_00975Not AvailableNegative205622 - 20664436783.4
translocation/assembly module tambDW777_00980Not AvailablePositive206849 - 211321168067.0
replicative dna helicaseDW777_00985Not AvailableNegative211479 - 21305057985.3
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseDW777_00990Not AvailablePositive213348 - 21418130906.1
hypothetical proteinDW777_00995Not AvailablePositive214266 - 21476018507.3
formate-dependent phosphoribosylglycinamide formyltransferaseDW777_01000Not AvailableNegative214830 - 21599643102.9
duf4301 family proteinDW777_01005Not AvailableNegative216135 - 21765256480.5

Displaying genes 211 – 220 of 3918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

30 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm00026123-oxohexadecanoyl-CoAC37H64N7O18P3SChemical structure of 3-oxohexadecanoyl-CoANot available
Average1019.926Da
Monoisotopic1019.324139Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 30 metabolites

Health Effects

No health effects information available for this bacterium.