Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux rnd transporter permease subunit | DXC16_03975 | Not Available | Negative | 870411 - 873527 | 112586.0 |
| efflux rnd transporter periplasmic adaptor subunit | DXC16_03980 | Not Available | Negative | 873532 - 874662 | 41358.6 |
| tolc family protein | DXC16_03985 | Not Available | Negative | 874717 - 876114 | 51961.1 |
| hypothetical protein | DXC16_03990 | Not Available | Negative | 876246 - 876788 | 19666.0 |
| merr family transcriptional regulator | DXC16_04000 | Not Available | Positive | 877904 - 878854 | 36728.4 |
| site-specific integrase | DXC16_04005 | Not Available | Positive | 878983 - 880104 | 43361.2 |
| hypothetical protein | DXC16_04010 | Not Available | Positive | 880471 - 881238 | 29222.6 |
| helix-turn-helix domain-containing protein | DXC16_04015 | Not Available | Positive | 881348 - 881719 | 13941.1 |
| duf3987 domain-containing protein | DXC16_04020 | Not Available | Positive | 881757 - 883115 | 51773.2 |
| hypothetical protein | DXC16_04025 | Not Available | Positive | 883227 - 884252 | 39412.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

