Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | DXC16_03875 | Not Available | Positive | 831637 - 832134 | 18707.5 |
| dtdp-glucose 4,6-dehydratase | DXC16_03880 | Not Available | Positive | 832183 - 833322 | 43738.0 |
| tonb-dependent receptor | DXC16_03885 | Not Available | Positive | 833794 - 836886 | 115070.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_03890 | Not Available | Positive | 836899 - 838716 | 68259.8 |
| duf4981 domain-containing protein | DXC16_03895 | Not Available | Negative | 838903 - 842133 | 122526.0 |
| glycoside hydrolase | DXC16_03900 | Not Available | Negative | 842189 - 844258 | 78010.4 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_03905 | Not Available | Negative | 844290 - 845825 | 58902.3 |
| susc/raga family tonb-linked outer membrane protein | DXC16_03910 | Not Available | Negative | 845846 - 849262 | 126368.0 |
| duf4974 domain-containing protein | DXC16_03915 | Not Available | Negative | 849407 - 850393 | 38650.5 |
| rna polymerase sigma-70 factor | DXC16_03920 | Not Available | Negative | 850523 - 851104 | 22694.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

