Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC16_03410 | Not Available | Positive | 713480 - 716734 | 121279.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_03415 | Not Available | Positive | 716755 - 718668 | 73430.1 |
| duf229 domain-containing protein | DXC16_03420 | Not Available | Positive | 718770 - 720206 | 55189.7 |
| glycoside hydrolase family 29 | DXC16_03425 | Not Available | Positive | 720210 - 721595 | 52612.5 |
| glycoside hydrolase family 36 | DXC16_03430 | Not Available | Positive | 721602 - 723677 | 78414.8 |
| sulfatase | DXC16_03435 | Not Available | Positive | 723696 - 725249 | 57831.5 |
| ribonuclease 3 | DXC16_03440 | Not Available | Negative | 725394 - 726320 | 35281.3 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DXC16_03445 | Not Available | Negative | 726323 - 727588 | 44849.9 |
| acyl carrier protein | DXC16_03450 | Not Available | Negative | 727607 - 727843 | 8382.75 |
| phosphoribosylglycinamide formyltransferase | DXC16_03455 | Not Available | Positive | 727996 - 728574 | 21386.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

