Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXC16_03160 | Not Available | Positive | 647919 - 649670 | 66225.7 |
| hypothetical protein | DXC16_03165 | Not Available | Positive | 649695 - 651473 | 64418.0 |
| arabinan endo-1,5-alpha-l-arabinosidase | DXC16_03170 | Not Available | Positive | 651547 - 653430 | 70262.1 |
| cysteine--trna ligase | DXC16_03175 | Not Available | Positive | 653805 - 655286 | 56255.0 |
| aromatic amino acid lyase | DXC16_03180 | Not Available | Positive | 655474 - 657045 | 59111.6 |
| 3-oxoacyl-acp reductase fabg | DXC16_03185 | Not Available | Positive | 657042 - 657770 | 26411.8 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DXC16_03190 | Not Available | Positive | 657778 - 659007 | 44242.6 |
| acyl carrier protein | DXC16_03195 | Not Available | Positive | 659029 - 659280 | 9584.45 |
| acyltransferase | DXC16_03200 | Not Available | Positive | 659280 - 660164 | 34490.0 |
| methyltransferase domain-containing protein | DXC16_03205 | Not Available | Positive | 660178 - 661248 | 40576.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

