Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosome-binding factor rbfa | DXC16_02910 | Not Available | Negative | 578255 - 578590 | 12972.9 |
| methyltransferase | DXC16_02915 | Not Available | Negative | 578664 - 579302 | 24383.5 |
| pyruvate kinase | DXC16_02920 | Not Available | Negative | 579318 - 580781 | 54241.6 |
| type ii 3-dehydroquinate dehydratase | DXC16_02925 | Not Available | Negative | 580814 - 581236 | 15666.9 |
| site-specific tyrosine recombinase xerd | DXC16_02930 | Not Available | Positive | 581303 - 582244 | 36180.1 |
| tetratricopeptide repeat protein | DXC16_02935 | Not Available | Positive | 582386 - 584062 | 60893.8 |
| duf4369 domain-containing protein | DXC16_02940 | Not Available | Positive | 584216 - 585283 | 40431.1 |
| atp-binding protein | DXC16_02945 | Not Available | Positive | 585288 - 586826 | 56291.9 |
| methionine--trna ligase | DXC16_02950 | Not Available | Positive | 587282 - 589324 | 77707.9 |
| lipopolysaccharide biosynthesis protein | DXC16_02955 | Not Available | Positive | 589406 - 590842 | 53599.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

