Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor n(5)-glutamine methyltransferase | DXC16_02860 | Not Available | Negative | 566769 - 567605 | 31840.4 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DXC16_02865 | Not Available | Positive | 567650 - 568702 | 39656.4 |
| hypothetical protein | DXC16_02870 | Not Available | Positive | 568830 - 570227 | 52324.1 |
| isoprenyl transferase | DXC16_02875 | Not Available | Positive | 570261 - 570992 | 28066.4 |
| outer membrane protein assembly factor bama | DXC16_02880 | Not Available | Positive | 571004 - 573646 | 100717.0 |
| omph family outer membrane protein | DXC16_02885 | Not Available | Positive | 573667 - 574182 | 18967.6 |
| omph family outer membrane protein | DXC16_02890 | Not Available | Positive | 574240 - 574743 | 19260.2 |
| glutamate racemase | DXC16_02895 | Not Available | Positive | 574846 - 575691 | 31392.0 |
| pyridoxamine kinase | DXC16_02900 | Not Available | Positive | 575748 - 576620 | 32647.3 |
| abc transporter permease | DXC16_02905 | Not Available | Negative | 577007 - 578245 | 45679.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

