Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate decarboxylase | DXC16_02710 | Not Available | Positive | 537103 - 538263 | 42749.4 |
| hypothetical protein | DXC16_02715 | Not Available | Negative | 538328 - 538834 | 19772.7 |
| glycosyltransferase | DXC16_02720 | Not Available | Positive | 539039 - 540196 | 44788.3 |
| antibiotic biosynthesis monooxygenase | DXC16_02725 | Not Available | Positive | 540245 - 540520 | 10430.6 |
| duf340 domain-containing protein | DXC16_02730 | Not Available | Positive | 541077 - 541364 | 10298.2 |
| lysine exporter lyso family protein | DXC16_02735 | Not Available | Positive | 541354 - 541974 | 22075.5 |
| abc transporter permease | DXC16_02740 | Not Available | Negative | 542321 - 543565 | 46918.6 |
| pyridoxal phosphate-dependent aminotransferase | DXC16_02745 | Not Available | Negative | 543567 - 544769 | 44969.1 |
| fucose isomerase | DXC16_02750 | Not Available | Positive | 544935 - 546170 | 46202.4 |
| duf4494 domain-containing protein | DXC16_02755 | Not Available | Positive | 546266 - 546748 | 18209.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

