Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pdz domain-containing protein | DXC16_24105 | Not Available | Positive | 5418431 - 5420125 | 63106.7 |
| hypothetical protein | DXC16_24110 | Not Available | Negative | 5420191 - 5422488 | 87673.7 |
| sensor histidine kinase | DXC16_24115 | Not Available | Positive | 5422610 - 5423995 | 53366.8 |
| dna-binding response regulator | DXC16_24120 | Not Available | Positive | 5424020 - 5424721 | 26500.3 |
| xre family transcriptional regulator | DXC16_24130 | Not Available | Negative | 5425275 - 5425589 | 11713.1 |
| type ii toxin-antitoxin system rele/pare family toxin | DXC16_24135 | Not Available | Negative | 5425595 - 5425942 | 13691.6 |
| clindamycin resistance transfer factor btga | DXC16_24140 | Not Available | Positive | 5426334 - 5426939 | 23234.0 |
| clindamycin resistance transfer factor btgb | DXC16_24145 | Not Available | Positive | 5426936 - 5427814 | 33771.8 |
| hypothetical protein | DXC16_24150 | Not Available | Negative | 5427872 - 5428063 | 7176.49 |
| hypothetical protein | DXC16_24155 | Not Available | Negative | 5428232 - 5429731 | 57090.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

