Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose reductase | DXC16_22925 | Not Available | Positive | 5136766 - 5137626 | 32219.3 |
| dtdp-glucose 4,6-dehydratase | DXC16_22930 | Not Available | Positive | 5137651 - 5138727 | 41496.0 |
| fecr family protein | DXC16_22935 | Not Available | Negative | 5138926 - 5139852 | 35762.9 |
| phosphoglycerate kinase | DXC16_22940 | Not Available | Positive | 5140076 - 5141329 | 44034.9 |
| hypothetical protein | DXC16_22945 | Not Available | Negative | 5141404 - 5142618 | 45675.3 |
| gamma-carboxymuconolactone decarboxylase | DXC16_22950 | Not Available | Negative | 5142753 - 5143583 | 31046.8 |
| beta-hexosaminidase | DXC16_22955 | Not Available | Negative | 5143817 - 5146240 | 91012.5 |
| duf1624 domain-containing protein | DXC16_22960 | Not Available | Positive | 5146441 - 5147532 | 40496.7 |
| rna polymerase sigma-70 factor | DXC16_22965 | Not Available | Positive | 5147557 - 5148117 | 21971.5 |
| hypothetical protein | DXC16_22970 | Not Available | Negative | 5148176 - 5149537 | 49039.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

