Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acrb/acrd/acrf family protein | DXC16_22825 | Not Available | Positive | 5109033 - 5112068 | 112044.0 |
| tolc family protein | DXC16_22830 | Not Available | Positive | 5112065 - 5113384 | 50562.7 |
| amino acid permease | DXC16_22835 | Not Available | Positive | 5113473 - 5115131 | 59786.5 |
| alpha-n-acetylglucosaminidase | DXC16_22840 | Not Available | Negative | 5115309 - 5117465 | 82617.3 |
| fumarate hydratase | DXC16_22845 | Not Available | Negative | 5117568 - 5119211 | 60487.7 |
| coce/nond family hydrolase | DXC16_22850 | Not Available | Positive | 5119350 - 5121257 | 73968.0 |
| lipopolysaccharide biosynthesis protein | DXC16_22855 | Not Available | Positive | 5121919 - 5123457 | 57665.3 |
| 4fe-4s dicluster domain-containing protein | DXC16_22860 | Not Available | Positive | 5123454 - 5124593 | 43195.3 |
| polysaccharide pyruvyl transferase family protein | DXC16_22865 | Not Available | Positive | 5124606 - 5125715 | 43258.7 |
| oligosaccharide repeat unit polymerase | DXC16_22870 | Not Available | Positive | 5125778 - 5127028 | 47638.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

