Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clc family h(+)/cl(-) exchange transporter | DXC16_21430 | Not Available | Negative | 4782176 - 4783774 | 59693.1 |
| marr family transcriptional regulator | DXC16_21435 | Not Available | Negative | 4783807 - 4784136 | 12226.9 |
| pyridine nucleotide-disulfide oxidoreductase | DXC16_21440 | Not Available | Negative | 4784170 - 4786671 | 90809.9 |
| mate family efflux transporter | DXC16_21445 | Not Available | Positive | 4786908 - 4788257 | 49603.2 |
| hotdog fold thioesterase | DXC16_21450 | Not Available | Positive | 4788349 - 4788756 | 14546.4 |
| isochorismate synthase | DXC16_21455 | Not Available | Positive | 4788753 - 4789895 | 43271.5 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DXC16_21460 | Not Available | Positive | 4789922 - 4791595 | 62975.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DXC16_21465 | Not Available | Positive | 4791595 - 4792416 | 30387.5 |
| o-succinylbenzoate synthase | DXC16_21470 | Not Available | Positive | 4792494 - 4793549 | 39848.0 |
| o-succinylbenzoic acid--coa ligase | DXC16_21475 | Not Available | Positive | 4793546 - 4794631 | 40618.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

