Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DXC16_21380 | Not Available | Positive | 4769170 - 4770120 | 36526.2 |
| tpm domain-containing protein | DXC16_21385 | Not Available | Positive | 4770117 - 4771037 | 33346.0 |
| lema family protein | DXC16_21390 | Not Available | Positive | 4771074 - 4771655 | 21752.9 |
| chorismate synthase | DXC16_21395 | Not Available | Positive | 4771864 - 4772940 | 39168.8 |
| dipeptidase | DXC16_21400 | Not Available | Positive | 4772954 - 4774306 | 49852.0 |
| nitroreductase family protein | DXC16_21405 | Not Available | Positive | 4774319 - 4774948 | 23122.0 |
| crispr-associated endonuclease cas2 | DXC16_21410 | Not Available | Negative | 4775152 - 4775490 | 13146.0 |
| type ii crispr-associated endonuclease cas1 | DXC16_21415 | Not Available | Negative | 4775490 - 4776422 | 35010.7 |
| cell filamentation protein fic | DXC16_21420 | Not Available | Negative | 4776449 - 4777447 | 38522.9 |
| type ii crispr rna-guided endonuclease cas9 | DXC16_21425 | Not Available | Negative | 4777462 - 4781991 | 176709.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

