Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DXC16_01710 | Not Available | Positive | 365591 - 368056 | 92784.0 |
| duf4858 domain-containing protein | DXC16_01715 | Not Available | Positive | 368146 - 368709 | 21541.2 |
| exopolygalacturonase | DXC16_01720 | Not Available | Negative | 368861 - 370165 | 49100.8 |
| beta-galactosidase | DXC16_01725 | Not Available | Negative | 370207 - 373095 | 109000.0 |
| glycoside hydrolase family 28 protein | DXC16_01730 | Not Available | Negative | 373372 - 375156 | 66004.3 |
| hypothetical protein | DXC16_01735 | Not Available | Positive | 375369 - 376064 | 26643.0 |
| glycosyl hydrolase family 43 | DXC16_01750 | Not Available | Negative | 378992 - 380314 | 49754.7 |
| arylsulfatase | DXC16_01755 | Not Available | Negative | 380714 - 382129 | 53041.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_01760 | Not Available | Negative | 382147 - 383772 | 61301.6 |
| susc/raga family tonb-linked outer membrane protein | DXC16_01765 | Not Available | Negative | 383785 - 387150 | 124295.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

