Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DXC16_19315 | Not Available | Positive | 4350664 - 4351035 | 13160.2 |
| glutaminase | DXC16_19320 | Not Available | Negative | 4351351 - 4352265 | 34090.9 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DXC16_19325 | Not Available | Negative | 4352279 - 4354123 | 68203.7 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DXC16_19330 | Not Available | Negative | 4354207 - 4354716 | 17745.0 |
| glycine cleavage system protein h | DXC16_19335 | Not Available | Negative | 4354841 - 4355221 | 14151.4 |
| pap2 family protein | DXC16_19340 | Not Available | Negative | 4355258 - 4355914 | 24797.8 |
| rna polymerase sigma-54 factor | DXC16_19345 | Not Available | Negative | 4355925 - 4357394 | 56144.2 |
| xaa-pro aminopeptidase | DXC16_19350 | Not Available | Positive | 4357523 - 4357753 | 8744.25 |
| glycyl-radical enzyme activating protein | DXC16_19355 | Not Available | Negative | 4358103 - 4359011 | 33564.0 |
| glycyl radical protein | DXC16_19360 | Not Available | Negative | 4359016 - 4361442 | 91994.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

