Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd-(d/e)xk nuclease family protein | DXC16_18595 | Not Available | Positive | 4168206 - 4171085 | 110988.0 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | DXC16_18600 | Not Available | Negative | 4171160 - 4171987 | 30753.2 |
| replicative dna helicase | DXC16_18605 | Not Available | Positive | 4172249 - 4173805 | 57459.0 |
| phenylalanine--trna ligase subunit beta | DXC16_18610 | Not Available | Positive | 4173959 - 4176421 | 91165.9 |
| yebc/pmpr family dna-binding transcriptional regulator | DXC16_18615 | Not Available | Positive | 4176455 - 4177195 | 27834.7 |
| tigr03905 family tscpd domain-containing protein | DXC16_18620 | Not Available | Positive | 4177197 - 4177442 | 9080.04 |
| hypothetical protein | DXC16_18630 | Not Available | Negative | 4178057 - 4178296 | 9121.88 |
| susc/raga family tonb-linked outer membrane protein | DXC16_18635 | Not Available | Positive | 4179013 - 4181709 | 98661.1 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_18640 | Not Available | Positive | 4181746 - 4183338 | 60955.6 |
| crp/fnr family transcriptional regulator | DXC16_18645 | Not Available | Positive | 4183348 - 4183950 | 23444.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

