Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate--trna ligase | DXC16_18120 | Not Available | Positive | 4056162 - 4057679 | 57905.3 |
| 3-deoxy-d-manno-octulosonic acid transferase | DXC16_18125 | Not Available | Positive | 4057692 - 4058912 | 46852.4 |
| hypothetical protein | DXC16_18130 | Not Available | Positive | 4059449 - 4059607 | 5641.7 |
| arac family transcriptional regulator | DXC16_18135 | Not Available | Positive | 4060092 - 4060580 | 18915.8 |
| hypothetical protein | DXC16_18140 | Not Available | Positive | 4060658 - 4063516 | 105417.0 |
| hypothetical protein | DXC16_18145 | Not Available | Positive | 4063655 - 4064311 | 25861.1 |
| nudix domain-containing protein | DXC16_18150 | Not Available | Positive | 4064262 - 4065152 | 34203.0 |
| nad-dependent epimerase/dehydratase family protein | DXC16_18155 | Not Available | Positive | 4065160 - 4066002 | 31290.1 |
| hypothetical protein | DXC16_18160 | Not Available | Positive | 4066109 - 4066486 | 14077.9 |
| m20/m25/m40 family metallo-hydrolase | DXC16_18165 | Not Available | Negative | 4066492 - 4067556 | 39103.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

