Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DXC16_01380 | Not Available | Negative | 271399 - 271683 | 11288.6 |
| sigma-70 family rna polymerase sigma factor | DXC16_01385 | Not Available | Negative | 271732 - 272286 | 21477.1 |
| pectate lyase | DXC16_01390 | Not Available | Negative | 272473 - 275559 | 115779.0 |
| polysaccharide lyase | DXC16_01395 | Not Available | Negative | 275561 - 277243 | 61325.8 |
| duf3826 domain-containing protein | DXC16_01400 | Not Available | Negative | 277443 - 278111 | 25071.4 |
| polysaccharide lyase | DXC16_01405 | Not Available | Negative | 278136 - 279869 | 64409.9 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_01410 | Not Available | Negative | 280038 - 282047 | 75993.3 |
| tonb-dependent receptor | DXC16_01415 | Not Available | Negative | 282068 - 285523 | 126263.0 |
| sugar phosphate isomerase/epimerase | DXC16_01420 | Not Available | Negative | 285553 - 286437 | 33290.8 |
| response regulator | DXC16_01425 | Not Available | Negative | 286603 - 291006 | 168981.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

