Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase reca | DXC16_16955 | Not Available | Negative | 3775067 - 3776110 | 37350.7 |
| thioredoxin-dependent thiol peroxidase | DXC16_16960 | Not Available | Negative | 3776123 - 3776569 | 16910.4 |
| saccharopine dehydrogenase family protein | DXC16_16965 | Not Available | Negative | 3776637 - 3777830 | 44966.5 |
| hypothetical protein | DXC16_16970 | Not Available | Negative | 3777914 - 3779167 | 47788.1 |
| meta domain-containing protein | DXC16_16975 | Not Available | Positive | 3779292 - 3780083 | 28686.0 |
| molecular chaperone dnak | DXC16_16980 | Not Available | Positive | 3780412 - 3782328 | 68358.2 |
| helix-turn-helix domain-containing protein | DXC16_16985 | Not Available | Positive | 3782532 - 3783077 | 21178.0 |
| site-specific integrase | DXC16_16990 | Not Available | Positive | 3783074 - 3784336 | 48145.1 |
| dna-binding protein | DXC16_16995 | Not Available | Positive | 3784651 - 3785004 | 13515.2 |
| virulence protein e | DXC16_17000 | Not Available | Positive | 3785001 - 3785600 | 23194.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

