Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase f | DXC16_16850 | Not Available | Negative | 3757166 - 3758545 | 52090.2 |
| uridine kinase | DXC16_16855 | Not Available | Negative | 3758542 - 3759153 | 23271.3 |
| dabb family protein | DXC16_16860 | Not Available | Positive | 3759259 - 3759558 | 11090.4 |
| paai family thioesterase | DXC16_16865 | Not Available | Positive | 3759569 - 3760060 | 18785.7 |
| atp phosphoribosyltransferase | DXC16_16870 | Not Available | Positive | 3760289 - 3761140 | 31336.4 |
| histidinol dehydrogenase | DXC16_16875 | Not Available | Positive | 3761190 - 3762470 | 46544.2 |
| histidinol-phosphate transaminase | DXC16_16880 | Not Available | Positive | 3762473 - 3763513 | 39610.4 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DXC16_16885 | Not Available | Positive | 3763517 - 3764635 | 42235.8 |
| nad(+) synthase | DXC16_16890 | Not Available | Negative | 3764725 - 3766650 | 71124.6 |
| transcriptional repressor | DXC16_16895 | Not Available | Positive | 3766815 - 3767225 | 15560.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

