Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized as being host-associated, specifically found in Homo sapiens. It possesses a single replicon and features a unique cellular structure with two membranes. The strain is categorized as mesophilic, indicating it thrives at moderate temperatures, although specific temperature ranges are not provided. The absence of mobility suggests that Phocaeicola vulgatus strain OM08-13BH relies on its host environment for dissemination, potentially influencing its ecological role within the human microbiome. This bacterium is free-living, which may imply that it can exist independently of its host under certain conditions. The presence of flagella indicates potential for motility; however, in the context of this strain, it does not contribute to mobility. Given its habitat, Phocaeicola vulgatus strain OM08-13BH may play a significant role in the gut microbiota of humans, contributing to digestive processes or maintaining gut health. As a member of the human microbiome, it may have implications for host metabolism and immune function. Understanding the specific interactions and functions of this strain can provide insight into its relevance in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain OM08-13BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDXC16_16645Not AvailableNegative3699501 - 370115963057.9
tonb-dependent receptorDXC16_16650Not AvailableNegative3701177 - 3704215112371.0
hypothetical proteinDXC16_16655Not AvailableNegative3704238 - 370573756154.5
hybrid sensor histidine kinase/response regulatorDXC16_16660Not AvailablePositive3705951 - 3709991153033.0
histidine-type phosphataseDXC16_16665Not AvailableNegative3710239 - 371197866792.9
glycoside hydrolase family 92 proteinDXC16_16670Not AvailableNegative3711985 - 371426786313.1
glycoside hydrolase family 28 proteinDXC16_16675Not AvailableNegative3714270 - 371568252158.1
glycoside hydrolase family 92 proteinDXC16_16680Not AvailableNegative3715708 - 371804188755.1
glycerophosphodiester phosphodiesteraseDXC16_16685Not AvailableNegative3718061 - 371887331001.9
ragb/susd family nutrient uptake outer membrane proteinDXC16_16690Not AvailableNegative3718947 - 372058761732.4

Displaying genes 3201 – 3210 of 4837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.