Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC16_16595 | Not Available | Positive | 3686341 - 3688641 | 86528.3 |
| duf4374 domain-containing protein | DXC16_16600 | Not Available | Positive | 3688699 - 3690099 | 51065.5 |
| pepsy domain-containing protein | DXC16_16605 | Not Available | Positive | 3690116 - 3691312 | 45260.4 |
| magnesium transporter cora family protein | DXC16_16610 | Not Available | Negative | 3691406 - 3692329 | 35626.5 |
| hypothetical protein | DXC16_16615 | Not Available | Positive | 3692380 - 3692568 | 7149.88 |
| peroxiredoxin | DXC16_16620 | Not Available | Positive | 3692836 - 3693402 | 21111.1 |
| alkyl hydroperoxide reductase subunit f | DXC16_16625 | Not Available | Positive | 3693415 - 3694965 | 55984.4 |
| laci family transcriptional regulator | DXC16_16630 | Not Available | Positive | 3695105 - 3696127 | 38256.6 |
| xylanase | DXC16_16635 | Not Available | Negative | 3696208 - 3697773 | 59563.2 |
| beta-glycosidase | DXC16_16640 | Not Available | Negative | 3697786 - 3699384 | 59513.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

