Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DXC16_16355 | Not Available | Negative | 3627353 - 3628618 | 46861.1 |
| inositol-3-phosphate synthase | DXC16_16360 | Not Available | Negative | 3628785 - 3630092 | 48823.8 |
| ribokinase | DXC16_16365 | Not Available | Positive | 3630228 - 3631124 | 33171.6 |
| sugar mfs transporter | DXC16_16370 | Not Available | Negative | 3631179 - 3632378 | 44345.3 |
| had family hydrolase | DXC16_16375 | Not Available | Negative | 3632385 - 3633107 | 27105.8 |
| upf0104 family protein | DXC16_16380 | Not Available | Negative | 3633112 - 3634113 | 37585.2 |
| cdp-alcohol phosphatidyltransferase family protein | DXC16_16385 | Not Available | Negative | 3634110 - 3635060 | 37224.4 |
| hypothetical protein | DXC16_16390 | Not Available | Negative | 3635068 - 3635919 | 31795.0 |
| ndp-sugar synthase | DXC16_16395 | Not Available | Negative | 3635939 - 3636649 | 26297.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DXC16_16400 | Not Available | Negative | 3636691 - 3637791 | 40617.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

