Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad:protein fmn transferase | DXC16_16255 | Not Available | Positive | 3611950 - 3612966 | 37820.5 |
| marc family protein | DXC16_16260 | Not Available | Negative | 3613125 - 3613727 | 22154.0 |
| crp/fnr family transcriptional regulator | DXC16_16265 | Not Available | Positive | 3613915 - 3614592 | 26004.6 |
| m3 family peptidase | DXC16_16270 | Not Available | Positive | 3614750 - 3616792 | 77820.4 |
| duf4847 domain-containing protein | DXC16_16275 | Not Available | Positive | 3616806 - 3617300 | 18544.7 |
| cmp deaminase | DXC16_16280 | Not Available | Positive | 3617305 - 3617739 | 16211.4 |
| s41 family peptidase | DXC16_16285 | Not Available | Positive | 3617754 - 3619502 | 64897.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DXC16_16290 | Not Available | Positive | 3619426 - 3619956 | 20433.5 |
| duf721 domain-containing protein | DXC16_16295 | Not Available | Negative | 3620122 - 3620412 | 11221.9 |
| dna replication/repair protein recf | DXC16_16300 | Not Available | Negative | 3620409 - 3621524 | 42967.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

