Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized as being host-associated, specifically found in Homo sapiens. It possesses a single replicon and features a unique cellular structure with two membranes. The strain is categorized as mesophilic, indicating it thrives at moderate temperatures, although specific temperature ranges are not provided. The absence of mobility suggests that Phocaeicola vulgatus strain OM08-13BH relies on its host environment for dissemination, potentially influencing its ecological role within the human microbiome. This bacterium is free-living, which may imply that it can exist independently of its host under certain conditions. The presence of flagella indicates potential for motility; however, in the context of this strain, it does not contribute to mobility. Given its habitat, Phocaeicola vulgatus strain OM08-13BH may play a significant role in the gut microbiota of humans, contributing to digestive processes or maintaining gut health. As a member of the human microbiome, it may have implications for host metabolism and immune function. Understanding the specific interactions and functions of this strain can provide insight into its relevance in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain OM08-13BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDXC16_16000Not AvailablePositive3558322 - 355867813010.0
diaminopimelate epimeraseDXC16_16005Not AvailablePositive3558691 - 35588767191.76
hypothetical proteinDXC16_16010Not AvailablePositive3558891 - 355961625732.9
atp-dependent dethiobiotin synthetase biodDXC16_16020Not AvailableNegative3560060 - 356070424302.0
malonyl-[acyl-carrier protein] o-methyltransferase biocDXC16_16025Not AvailableNegative3560719 - 356147428797.8
duf452 family proteinDXC16_16030Not AvailableNegative3561486 - 356213925130.3
8-amino-7-oxononanoate synthaseDXC16_16035Not AvailableNegative3562136 - 356328743109.2
adenosylmethionine--8-amino-7-oxononanoate transaminaseDXC16_16040Not AvailableNegative3563315 - 356458647732.2
biotin synthase biobDXC16_16045Not AvailableNegative3564625 - 356558435544.0
hypothetical proteinDXC16_16050Not AvailableNegative3565597 - 356596213987.2

Displaying genes 3081 – 3090 of 4837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.