Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arabinosidase | DXC16_15745 | Not Available | Negative | 3496782 - 3497786 | 38217.7 |
| aldehyde dehydrogenase | DXC16_15750 | Not Available | Negative | 3497972 - 3499408 | 52569.3 |
| helix-turn-helix domain-containing protein | DXC16_15755 | Not Available | Negative | 3499620 - 3502409 | 106096.0 |
| beta-xylosidase | DXC16_15760 | Not Available | Negative | 3502584 - 3504176 | 61025.1 |
| glycoside hydrolase | DXC16_15765 | Not Available | Negative | 3504195 - 3506279 | 78424.4 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_15770 | Not Available | Negative | 3506371 - 3507924 | 58673.7 |
| susc/raga family tonb-linked outer membrane protein | DXC16_15775 | Not Available | Negative | 3507937 - 3511293 | 124949.0 |
| duf4974 domain-containing protein | DXC16_15780 | Not Available | Negative | 3511448 - 3512392 | 35899.4 |
| rna polymerase sigma-70 factor | DXC16_15785 | Not Available | Negative | 3512511 - 3513098 | 22864.5 |
| duf1573 domain-containing protein | DXC16_15790 | Not Available | Negative | 3513193 - 3513462 | 10061.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

