Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXC16_15695 | Not Available | Negative | 3478776 - 3480941 | 79682.8 |
| tonb-dependent receptor | DXC16_15700 | Not Available | Negative | 3480974 - 3484246 | 118866.0 |
| pectin esterase | DXC16_15705 | Not Available | Negative | 3484465 - 3485415 | 35858.5 |
| glycoside hydrolase family 88 protein | DXC16_15710 | Not Available | Negative | 3485430 - 3486659 | 47064.1 |
| pts sugar transporter subunit iic | DXC16_15715 | Not Available | Positive | 3486949 - 3488340 | 49974.0 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DXC16_15720 | Not Available | Positive | 3488359 - 3489315 | 35966.2 |
| mfs transporter | DXC16_15725 | Not Available | Positive | 3489535 - 3491010 | 54265.1 |
| dna helicase | DXC16_15730 | Not Available | Negative | 3491064 - 3494390 | 128339.0 |
| hypothetical protein | DXC16_15735 | Not Available | Negative | 3494412 - 3495152 | 27970.5 |
| duf4038 domain-containing protein | DXC16_15740 | Not Available | Negative | 3495249 - 3496712 | 55673.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

