Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DXC16_15485 | Not Available | Positive | 3418646 - 3420964 | 86968.6 |
| duf4980 domain-containing protein | DXC16_15490 | Not Available | Positive | 3421113 - 3422996 | 70937.3 |
| mfs transporter | DXC16_15495 | Not Available | Positive | 3423012 - 3424172 | 41814.0 |
| carbohydrate kinase | DXC16_15500 | Not Available | Positive | 3424200 - 3425087 | 32432.2 |
| response regulator | DXC16_15505 | Not Available | Positive | 3425283 - 3428009 | 103092.0 |
| amino acid-binding protein | DXC16_15510 | Not Available | Negative | 3428052 - 3428480 | 15643.0 |
| phenylacetate--coa ligase | DXC16_15515 | Not Available | Negative | 3428492 - 3429790 | 49228.5 |
| duf3256 family protein | DXC16_15520 | Not Available | Positive | 3429904 - 3430551 | 24349.6 |
| 50s ribosomal protein l31 type b | DXC16_15525 | Not Available | Negative | 3430636 - 3430890 | 9656.59 |
| class ii fructose-1,6-bisphosphate aldolase | DXC16_15530 | Not Available | Positive | 3431222 - 3432226 | 36460.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

