Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rip metalloprotease rsep | DXC16_15435 | Not Available | Positive | 3406751 - 3408094 | 50887.1 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DXC16_15440 | Not Available | Negative | 3408669 - 3409127 | 17410.7 |
| anaerobic ribonucleoside triphosphate reductase | DXC16_15445 | Not Available | Negative | 3409133 - 3411409 | 86287.2 |
| hemolysin iii | DXC16_15450 | Not Available | Negative | 3411704 - 3412339 | 23650.2 |
| hdig domain-containing protein | DXC16_15455 | Not Available | Negative | 3412344 - 3413846 | 57599.9 |
| hypothetical protein | DXC16_15460 | Not Available | Positive | 3413864 - 3414688 | 30836.1 |
| holliday junction branch migration protein ruva | DXC16_15465 | Not Available | Negative | 3414776 - 3415369 | 21141.8 |
| diaminopimelate dehydrogenase | DXC16_15470 | Not Available | Positive | 3415545 - 3416444 | 32291.9 |
| prolipoprotein diacylglyceryl transferase | DXC16_15475 | Not Available | Positive | 3416551 - 3417357 | 31284.6 |
| dna-binding protein | DXC16_15480 | Not Available | Negative | 3417399 - 3418010 | 23004.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

