Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized as being host-associated, specifically found in Homo sapiens. It possesses a single replicon and features a unique cellular structure with two membranes. The strain is categorized as mesophilic, indicating it thrives at moderate temperatures, although specific temperature ranges are not provided. The absence of mobility suggests that Phocaeicola vulgatus strain OM08-13BH relies on its host environment for dissemination, potentially influencing its ecological role within the human microbiome. This bacterium is free-living, which may imply that it can exist independently of its host under certain conditions. The presence of flagella indicates potential for motility; however, in the context of this strain, it does not contribute to mobility. Given its habitat, Phocaeicola vulgatus strain OM08-13BH may play a significant role in the gut microbiota of humans, contributing to digestive processes or maintaining gut health. As a member of the human microbiome, it may have implications for host metabolism and immune function. Understanding the specific interactions and functions of this strain can provide insight into its relevance in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain OM08-13BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s9 family peptidaseDXC16_13590Not AvailableNegative3030838 - 303305183610.4
rna methyltransferaseDXC16_13595Not AvailableNegative3033058 - 303450656204.3
type ii toxin-antitoxin system hicb family antitoxinDXC16_13600Not AvailableNegative3035018 - 30352097388.35
serine acetyltransferaseDXC16_13605Not AvailableNegative3035360 - 303626832799.2
ribonuclease rDXC16_13610Not AvailableNegative3036569 - 303871681953.4
cation transporterDXC16_13615Not AvailablePositive3038847 - 303974932965.4
nad(p)-dependent oxidoreductaseDXC16_13620Not AvailablePositive3039760 - 304080640078.3
phosphatase pap2 family proteinDXC16_13625Not AvailablePositive3040797 - 304177437786.7
duf2807 domain-containing proteinDXC16_13630Not AvailablePositive3041951 - 304280229119.2
trna dihydrouridine synthase dusbDXC16_13635Not AvailableNegative3042898 - 304388737212.5

Displaying genes 2621 – 2630 of 4837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.