Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DXC16_13440 | Not Available | Positive | 2983565 - 2986288 | 103393.0 |
| glycoside hydrolase | DXC16_13445 | Not Available | Positive | 2986325 - 2988727 | 89865.8 |
| glycoside hydrolase family 127 protein | DXC16_13450 | Not Available | Positive | 2988798 - 2991203 | 89713.0 |
| s9 family peptidase | DXC16_13455 | Not Available | Positive | 2991215 - 2993458 | 85692.8 |
| tonb-dependent receptor | DXC16_13460 | Not Available | Positive | 2993988 - 2997323 | 122693.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_13465 | Not Available | Positive | 2997336 - 2999375 | 76712.5 |
| hypothetical protein | DXC16_13470 | Not Available | Positive | 2999395 - 3001704 | 86340.0 |
| hypothetical protein | DXC16_13475 | Not Available | Negative | 3001735 - 3001989 | 10260.6 |
| pectate lyase | DXC16_13480 | Not Available | Positive | 3001973 - 3004114 | 81700.3 |
| duf1593 domain-containing protein | DXC16_13485 | Not Available | Positive | 3004131 - 3005486 | 51251.5 |
Pathways
343 pathways
Health Effects
No health effects information available for this bacterium.

