Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-n-arabinofuranosidase | DXC16_13020 | Not Available | Negative | 2891955 - 2892926 | 36891.2 |
| endo-1,4-beta-xylanase | DXC16_13025 | Not Available | Negative | 2892939 - 2894060 | 42056.4 |
| is110 family transposase | DXC16_13030 | Not Available | Positive | 2894273 - 2895238 | 35628.5 |
| mfs transporter | DXC16_13035 | Not Available | Negative | 2895409 - 2896902 | 54449.7 |
| glycoside hydrolase family 16 protein | DXC16_13040 | Not Available | Negative | 2897204 - 2897995 | 30551.4 |
| phosphoglucosamine mutase | DXC16_13045 | Not Available | Negative | 2898086 - 2899474 | 50475.7 |
| duf4827 domain-containing protein | DXC16_13050 | Not Available | Negative | 2899471 - 2900106 | 24123.5 |
| bifunctional oligoribonuclease/pap phosphatase nrna | DXC16_13055 | Not Available | Negative | 2900189 - 2901229 | 39376.4 |
| comec family competence protein | DXC16_13060 | Not Available | Negative | 2901279 - 2903198 | 72666.6 |
| ribulose-phosphate 3-epimerase | DXC16_13065 | Not Available | Negative | 2903245 - 2903898 | 23913.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

