Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DXC16_12970 | Not Available | Positive | 2871572 - 2874577 | 114693.0 |
| rhamnogalacturonan lyase | DXC16_12975 | Not Available | Positive | 2874702 - 2876528 | 66998.9 |
| rhamnogalacturonan acetylesterase | DXC16_12980 | Not Available | Positive | 2876763 - 2878319 | 57980.5 |
| hypothetical protein | DXC16_12985 | Not Available | Positive | 2878341 - 2881640 | 124975.0 |
| aaa family atpase | DXC16_12990 | Not Available | Negative | 2881778 - 2883328 | 60752.2 |
| hypothetical protein | DXC16_12995 | Not Available | Positive | 2883585 - 2883872 | 10825.5 |
| hypothetical protein | DXC16_13000 | Not Available | Negative | 2884617 - 2884802 | 7342.25 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_13005 | Not Available | Negative | 2884807 - 2886741 | 71558.0 |
| tonb-dependent receptor | DXC16_13010 | Not Available | Negative | 2886756 - 2889827 | 113098.0 |
| glycoside hydrolase family 43 protein | DXC16_13015 | Not Available | Negative | 2889869 - 2891605 | 64662.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

