Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized as being host-associated, specifically found in Homo sapiens. It possesses a single replicon and features a unique cellular structure with two membranes. The strain is categorized as mesophilic, indicating it thrives at moderate temperatures, although specific temperature ranges are not provided. The absence of mobility suggests that Phocaeicola vulgatus strain OM08-13BH relies on its host environment for dissemination, potentially influencing its ecological role within the human microbiome. This bacterium is free-living, which may imply that it can exist independently of its host under certain conditions. The presence of flagella indicates potential for motility; however, in the context of this strain, it does not contribute to mobility. Given its habitat, Phocaeicola vulgatus strain OM08-13BH may play a significant role in the gut microbiota of humans, contributing to digestive processes or maintaining gut health. As a member of the human microbiome, it may have implications for host metabolism and immune function. Understanding the specific interactions and functions of this strain can provide insight into its relevance in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain OM08-13BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rok family proteinDXC16_12820Not AvailablePositive2815329 - 281630034315.4
l-rhamnose mutarotaseDXC16_12825Not AvailablePositive2816300 - 281668915271.5
isoaspartyl peptidase/l-asparaginaseDXC16_12830Not AvailablePositive2817398 - 281838434958.3
glycosyl hydrolase family 2DXC16_12835Not AvailableNegative2819314 - 2822076104068.0
glycoside hydrolase family 28 proteinDXC16_12840Not AvailableNegative2822093 - 282351752145.9
hypothetical proteinDXC16_12845Not AvailableNegative2823533 - 282433630936.2
duf4450 domain-containing proteinDXC16_12850Not AvailableNegative2824333 - 282503125996.3
glycoside hydrolase family 28 proteinDXC16_12855Not AvailableNegative2825009 - 282649355039.5
rhamnogalacturonan acetylesteraseDXC16_12860Not AvailableNegative2826511 - 282778547788.3
beta-glucuronidaseDXC16_12865Not AvailableNegative2827804 - 2830671110113.0

Displaying genes 2471 – 2480 of 4837 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.