Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | DXC16_12820 | Not Available | Positive | 2815329 - 2816300 | 34315.4 |
| l-rhamnose mutarotase | DXC16_12825 | Not Available | Positive | 2816300 - 2816689 | 15271.5 |
| isoaspartyl peptidase/l-asparaginase | DXC16_12830 | Not Available | Positive | 2817398 - 2818384 | 34958.3 |
| glycosyl hydrolase family 2 | DXC16_12835 | Not Available | Negative | 2819314 - 2822076 | 104068.0 |
| glycoside hydrolase family 28 protein | DXC16_12840 | Not Available | Negative | 2822093 - 2823517 | 52145.9 |
| hypothetical protein | DXC16_12845 | Not Available | Negative | 2823533 - 2824336 | 30936.2 |
| duf4450 domain-containing protein | DXC16_12850 | Not Available | Negative | 2824333 - 2825031 | 25996.3 |
| glycoside hydrolase family 28 protein | DXC16_12855 | Not Available | Negative | 2825009 - 2826493 | 55039.5 |
| rhamnogalacturonan acetylesterase | DXC16_12860 | Not Available | Negative | 2826511 - 2827785 | 47788.3 |
| beta-glucuronidase | DXC16_12865 | Not Available | Negative | 2827804 - 2830671 | 110113.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

