Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXC16_12560 | Not Available | Negative | 2744294 - 2745811 | 57946.4 |
| tonb-dependent receptor | DXC16_12565 | Not Available | Negative | 2745832 - 2748960 | 116518.0 |
| tetratricopeptide repeat protein | DXC16_12570 | Not Available | Negative | 2749184 - 2750809 | 63066.8 |
| ribonuclease hii | DXC16_12575 | Not Available | Positive | 2750911 - 2751516 | 22930.4 |
| l-fucose:h+ symporter permease | DXC16_12580 | Not Available | Negative | 2751659 - 2752972 | 48425.4 |
| l-fucose isomerase | DXC16_12585 | Not Available | Negative | 2753085 - 2754860 | 65638.0 |
| gntr family transcriptional regulator | DXC16_12590 | Not Available | Negative | 2754882 - 2755862 | 38069.7 |
| hypothetical protein | DXC16_12595 | Not Available | Negative | 2756038 - 2756244 | 7450.12 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | DXC16_12600 | Not Available | Positive | 2756311 - 2757825 | 55852.0 |
| duf3109 family protein | DXC16_12605 | Not Available | Positive | 2757928 - 2758509 | 22097.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

