Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 16 protein | DXC16_12155 | Not Available | Positive | 2645643 - 2646491 | 33051.1 |
| beta-glucanase | DXC16_12160 | Not Available | Positive | 2646503 - 2647639 | 42262.9 |
| glycoside hydrolase | DXC16_12165 | Not Available | Positive | 2647964 - 2648965 | 37871.4 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_12170 | Not Available | Negative | 2649085 - 2650638 | 58382.6 |
| tonb-dependent receptor | DXC16_12175 | Not Available | Negative | 2650651 - 2653722 | 113213.0 |
| glycoside hydrolase | DXC16_12180 | Not Available | Positive | 2654303 - 2656249 | 73440.1 |
| alpha-l-arabinofuranosidase | DXC16_12185 | Not Available | Positive | 2656277 - 2658775 | 92451.5 |
| beta-galactosidase | DXC16_12190 | Not Available | Positive | 2658792 - 2661140 | 88315.6 |
| helix-turn-helix domain-containing protein | DXC16_12195 | Not Available | Positive | 2661328 - 2664168 | 108715.0 |
| tonb-dependent receptor | DXC16_12200 | Not Available | Positive | 2664380 - 2667328 | 108963.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

