Phocaeicola vulgatus strain OM08-13BH

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain OM08-13BH is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized as being host-associated, specifically found in Homo sapiens. It possesses a single replicon and features a unique cellular structure with two membranes. The strain is categorized as mesophilic, indicating it thrives at moderate temperatures, although specific temperature ranges are not provided. The absence of mobility suggests that Phocaeicola vulgatus strain OM08-13BH relies on its host environment for dissemination, potentially influencing its ecological role within the human microbiome. This bacterium is free-living, which may imply that it can exist independently of its host under certain conditions. The presence of flagella indicates potential for motility; however, in the context of this strain, it does not contribute to mobility. Given its habitat, Phocaeicola vulgatus strain OM08-13BH may play a significant role in the gut microbiota of humans, contributing to digestive processes or maintaining gut health. As a member of the human microbiome, it may have implications for host metabolism and immune function. Understanding the specific interactions and functions of this strain can provide insight into its relevance in human health and disease dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain OM08-13BH

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain OM08-13BH
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain OM08-13BH OM08-13BH.Scaf171, whole

Gene Summary

Adenine Count

1637192 bp

Thymine Count

1621139 bp

Guanine Count

1179841 bp

Cytosine Count

1218260 bp

Genome Length

5657833 bp

Protein-coding Genes

4696 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseDXC16_12105Not AvailablePositive2623675 - 262497348354.2
neuraminidaseDXC16_12110Not AvailablePositive2625396 - 262667049248.1
duf2264 domain-containing proteinDXC16_12115Not AvailablePositive2626762 - 262907788824.0
duf3810 domain-containing proteinDXC16_12120Not AvailablePositive2629219 - 263025940933.9
hybrid sensor histidine kinase/response regulatorDXC16_12125Not AvailableNegative2630477 - 2634475152298.0
tonb-dependent receptorDXC16_12130Not AvailablePositive2634792 - 2637920116750.0
ragb/susd family nutrient uptake outer membrane proteinDXC16_12135Not AvailablePositive2637935 - 263982772415.0
susc/raga family tonb-linked outer membrane proteinDXC16_12140Not AvailablePositive2639862 - 2642879112653.0
ragb/susd family nutrient uptake outer membrane proteinDXC16_12145Not AvailablePositive2642906 - 264459164588.6
carbohydrate-binding proteinDXC16_12150Not AvailablePositive2644626 - 264551633030.6

Displaying genes 2331 – 2340 of 4837 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.