Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DXC16_12105 | Not Available | Positive | 2623675 - 2624973 | 48354.2 |
| neuraminidase | DXC16_12110 | Not Available | Positive | 2625396 - 2626670 | 49248.1 |
| duf2264 domain-containing protein | DXC16_12115 | Not Available | Positive | 2626762 - 2629077 | 88824.0 |
| duf3810 domain-containing protein | DXC16_12120 | Not Available | Positive | 2629219 - 2630259 | 40933.9 |
| hybrid sensor histidine kinase/response regulator | DXC16_12125 | Not Available | Negative | 2630477 - 2634475 | 152298.0 |
| tonb-dependent receptor | DXC16_12130 | Not Available | Positive | 2634792 - 2637920 | 116750.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_12135 | Not Available | Positive | 2637935 - 2639827 | 72415.0 |
| susc/raga family tonb-linked outer membrane protein | DXC16_12140 | Not Available | Positive | 2639862 - 2642879 | 112653.0 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_12145 | Not Available | Positive | 2642906 - 2644591 | 64588.6 |
| carbohydrate-binding protein | DXC16_12150 | Not Available | Positive | 2644626 - 2645516 | 33030.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

