Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtra family protein | DXC16_11280 | Not Available | Negative | 2471549 - 2471938 | 14958.9 |
| hypothetical protein | DXC16_11290 | Not Available | Negative | 2473436 - 2473621 | 7348.38 |
| site-specific integrase | DXC16_11295 | Not Available | Positive | 2473850 - 2474743 | 34693.9 |
| recombinase xerd | DXC16_11300 | Not Available | Positive | 2474790 - 2475119 | 12717.8 |
| duf4465 domain-containing protein | DXC16_11305 | Not Available | Positive | 2475853 - 2476770 | 33755.9 |
| cell surface protein | DXC16_11310 | Not Available | Positive | 2476835 - 2478616 | 66390.8 |
| epidermal growth-factor receptor (egfr) l domain protein | DXC16_11315 | Not Available | Positive | 2478631 - 2480721 | 76016.3 |
| ynce family protein | DXC16_11320 | Not Available | Positive | 2480750 - 2481850 | 42574.6 |
| tonb-dependent receptor | DXC16_11325 | Not Available | Positive | 2481869 - 2483947 | 78463.8 |
| iron abc transporter substrate-binding protein | DXC16_11330 | Not Available | Positive | 2483959 - 2485098 | 41717.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

