Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trkh family potassium uptake protein | DXC16_11220 | Not Available | Positive | 2462194 - 2463702 | 56395.7 |
| mate family efflux transporter | DXC16_11225 | Not Available | Positive | 2463828 - 2465189 | 49488.5 |
| rlua family pseudouridine synthase | DXC16_11230 | Not Available | Negative | 2465255 - 2466877 | 62147.7 |
| hypothetical protein | DXC16_11240 | Not Available | Positive | 2467427 - 2467633 | 7806.67 |
| hypothetical protein | DXC16_11250 | Not Available | Positive | 2467844 - 2468317 | 18360.6 |
| mgmt family protein | DXC16_11255 | Not Available | Negative | 2468267 - 2468620 | 13274.9 |
| nitrous oxide-stimulated promoter family protein | DXC16_11260 | Not Available | Negative | 2468626 - 2468919 | 11961.9 |
| maoc family dehydratase | DXC16_11265 | Not Available | Positive | 2469017 - 2469481 | 17703.5 |
| gnat family n-acetyltransferase | DXC16_11270 | Not Available | Negative | 2469673 - 2470614 | 36101.8 |
| sdr family oxidoreductase | DXC16_11275 | Not Available | Negative | 2470657 - 2471532 | 33007.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

