Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DXC16_10525 | Not Available | Positive | 2321901 - 2322911 | 38600.0 |
| gfo/idh/moca family oxidoreductase | DXC16_10530 | Not Available | Negative | 2323034 - 2324275 | 47385.8 |
| glycosidase | DXC16_10535 | Not Available | Negative | 2324734 - 2325735 | 37573.7 |
| mfs transporter | DXC16_10540 | Not Available | Negative | 2325768 - 2327066 | 47974.8 |
| glycoside hydrolase family 97 protein | DXC16_10545 | Not Available | Negative | 2327190 - 2329205 | 75845.2 |
| endonuclease | DXC16_10550 | Not Available | Negative | 2329393 - 2330238 | 31930.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DXC16_10555 | Not Available | Negative | 2330282 - 2332051 | 66840.8 |
| susc/raga family tonb-linked outer membrane protein | DXC16_10560 | Not Available | Negative | 2332075 - 2335476 | 124973.0 |
| glycoside hydrolase family 92 protein | DXC16_10570 | Not Available | Negative | 2335766 - 2338078 | 87784.7 |
| glycoside hydrolase family 92 protein | DXC16_10575 | Not Available | Negative | 2338108 - 2340390 | 86502.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

