Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fadr family transcriptional regulator | DXC16_10225 | Not Available | Positive | 2268299 - 2269045 | 28695.9 |
| sialidase | DXC16_10230 | Not Available | Positive | 2269051 - 2270760 | 63977.8 |
| hypothetical protein | DXC16_10235 | Not Available | Negative | 2270746 - 2270934 | 7431.94 |
| 3-deoxy-7-phosphoheptulonate synthase | DXC16_10240 | Not Available | Negative | 2270963 - 2272030 | 39929.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DXC16_10245 | Not Available | Negative | 2272050 - 2273234 | 45052.1 |
| prephenate dehydratase | DXC16_10250 | Not Available | Negative | 2273209 - 2274051 | 31728.1 |
| transcriptional regulator | DXC16_10255 | Not Available | Negative | 2274309 - 2274665 | 13384.4 |
| protease | DXC16_10260 | Not Available | Positive | 2274855 - 2275385 | 18954.9 |
| pyridoxal phosphate-dependent aminotransferase | DXC16_10265 | Not Available | Positive | 2275454 - 2276629 | 44770.1 |
| ai-2e family transporter | DXC16_10270 | Not Available | Negative | 2276630 - 2277631 | 36988.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

