Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DXC16_10070 | Not Available | Positive | 2224009 - 2225697 | 64144.1 |
| hypothetical protein | DXC16_10075 | Not Available | Positive | 2225715 - 2227391 | 63059.9 |
| abc transporter atp-binding protein | DXC16_10080 | Not Available | Positive | 2227787 - 2229730 | 73678.4 |
| m13 family peptidase | DXC16_10085 | Not Available | Positive | 2229780 - 2231792 | 74950.0 |
| hypothetical protein | DXC16_10090 | Not Available | Positive | 2231822 - 2232325 | 19121.3 |
| efflux rnd transporter periplasmic adaptor subunit | DXC16_10095 | Not Available | Positive | 2232420 - 2233679 | 45794.5 |
| cusa/czca family heavy metal efflux rnd transporter | DXC16_10100 | Not Available | Positive | 2233691 - 2236774 | 112482.0 |
| tolc family protein | DXC16_10105 | Not Available | Positive | 2236785 - 2237954 | 43861.6 |
| nitroreductase family protein | DXC16_10110 | Not Available | Positive | 2238068 - 2238796 | 27942.3 |
| gfo/idh/moca family oxidoreductase | DXC16_10120 | Not Available | Negative | 2239165 - 2240727 | 58099.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

