Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nlpc/p60 family protein | DXC16_09865 | Not Available | Positive | 2175204 - 2175716 | 19478.6 |
| had family hydrolase | DXC16_09870 | Not Available | Positive | 2175772 - 2177841 | 79713.3 |
| 50s ribosomal protein l21 | DXC16_09875 | Not Available | Positive | 2178055 - 2178372 | 11743.4 |
| 50s ribosomal protein l27 | DXC16_09880 | Not Available | Positive | 2178394 - 2178657 | 9251.19 |
| thiamine diphosphokinase | DXC16_09885 | Not Available | Negative | 2178714 - 2179349 | 23777.5 |
| nicotinamide riboside transporter pnuc | DXC16_09890 | Not Available | Negative | 2179336 - 2179908 | 22114.5 |
| serine--trna ligase | DXC16_09895 | Not Available | Positive | 2180028 - 2181302 | 47884.3 |
| mfs transporter | DXC16_09900 | Not Available | Positive | 2181442 - 2182659 | 43390.6 |
| bifunctional dihydroorotate dehydrogenase b nad binding subunit/nadph-dependent glutamate synthase | DXC16_09905 | Not Available | Positive | 2182842 - 2185139 | 82892.6 |
| duf4858 domain-containing protein | DXC16_09910 | Not Available | Positive | 2185550 - 2186320 | 29526.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

