Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | DXC16_09445 | Not Available | Positive | 2076981 - 2077607 | 23001.3 |
| thiol peroxidase | DXC16_09450 | Not Available | Positive | 2077676 - 2078179 | 17976.7 |
| gdp-l-fucose synthase | DXC16_09455 | Not Available | Negative | 2078328 - 2079404 | 40498.7 |
| gdp-mannose 4,6-dehydratase | DXC16_09460 | Not Available | Negative | 2079404 - 2080486 | 41218.5 |
| mannose-1-phosphate guanylyltransferase | DXC16_09465 | Not Available | Negative | 2080662 - 2081726 | 40506.4 |
| undecaprenyl-phosphate glucose phosphotransferase | DXC16_09470 | Not Available | Positive | 2081840 - 2083243 | 54181.0 |
| glucose-1-phosphate thymidylyltransferase | DXC16_09475 | Not Available | Positive | 2083279 - 2084166 | 32737.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DXC16_09480 | Not Available | Positive | 2084166 - 2084735 | 21796.7 |
| chain-length determining protein | DXC16_09485 | Not Available | Negative | 2084912 - 2086051 | 41526.8 |
| capsule biosynthesis protein | DXC16_09490 | Not Available | Negative | 2086059 - 2088551 | 92296.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

