Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | DXC16_09190 | Not Available | Negative | 2015764 - 2016678 | 33424.2 |
| mfs transporter | DXC16_09195 | Not Available | Negative | 2016715 - 2017905 | 43394.0 |
| glutamate decarboxylase | DXC16_09200 | Not Available | Positive | 2018163 - 2019611 | 54701.8 |
| glutaminase | DXC16_09205 | Not Available | Positive | 2019677 - 2020639 | 34758.9 |
| copper homeostasis protein cutc | DXC16_09210 | Not Available | Positive | 2020940 - 2021803 | 31395.5 |
| transglutaminase domain-containing protein | DXC16_09215 | Not Available | Negative | 2021895 - 2024558 | 99180.9 |
| two pore domain potassium channel family protein | DXC16_09220 | Not Available | Negative | 2024640 - 2025374 | 28208.9 |
| amino acid permease | DXC16_09225 | Not Available | Positive | 2025541 - 2027118 | 56476.7 |
| pas domain-containing sensor histidine kinase | DXC16_09230 | Not Available | Positive | 2027335 - 2029608 | 87684.4 |
| na+/h+ antiporter nhaa | DXC16_09235 | Not Available | Negative | 2029611 - 2030951 | 48656.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

