Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4293 family protein | DXC16_00310 | Not Available | Negative | 71516 - 71968 | 16883.5 |
| rna polymerase rpb6 | DXC16_00315 | Not Available | Negative | 72218 - 72553 | 12965.3 |
| outer membrane protein assembly factor bamd | DXC16_00320 | Not Available | Negative | 72570 - 73406 | 32450.3 |
| excinuclease abc subunit uvrb | DXC16_00325 | Not Available | Positive | 73572 - 75605 | 77685.6 |
| porin | DXC16_00330 | Not Available | Negative | 75772 - 76785 | 38655.0 |
| yigz family protein | DXC16_00335 | Not Available | Negative | 76976 - 77578 | 22823.7 |
| exonuclease | DXC16_00340 | Not Available | Negative | 77612 - 78100 | 18589.9 |
| patatin | DXC16_00345 | Not Available | Positive | 78308 - 80518 | 81980.5 |
| mannonate dehydratase | DXC16_00350 | Not Available | Negative | 80501 - 81679 | 44739.9 |
| type i pullulanase | DXC16_00355 | Not Available | Negative | 81737 - 83731 | 74625.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

