Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 2 protein | DXC16_08300 | Not Available | Negative | 1829116 - 1831794 | 101266.0 |
| glycoside hydrolase | DXC16_08305 | Not Available | Negative | 1831857 - 1833938 | 80492.9 |
| duf4982 domain-containing protein | DXC16_08310 | Not Available | Negative | 1833935 - 1836382 | 92733.3 |
| ragb/susd family nutrient uptake outer membrane protein | DXC16_08315 | Not Available | Negative | 1836481 - 1838022 | 59338.3 |
| susc/raga family tonb-linked outer membrane protein | DXC16_08320 | Not Available | Negative | 1838036 - 1841389 | 124333.0 |
| fecr family protein | DXC16_08325 | Not Available | Negative | 1841542 - 1842477 | 36575.0 |
| rna polymerase sigma-70 factor | DXC16_08330 | Not Available | Negative | 1842532 - 1843122 | 23832.7 |
| Trna-met | Not Available | Not Available | Positive | 1843458 - 1843533 | Not Available |
| tetr/acrr family transcriptional regulator | DXC16_08340 | Not Available | Positive | 1843765 - 1844364 | 22662.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DXC16_08345 | Not Available | Positive | 1844396 - 1845142 | 25964.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

