Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain OM08-13BH |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1637192 bp
Thymine Count
1621139 bp
Guanine Count
1179841 bp
Cytosine Count
1218260 bp
Genome Length
5657833 bp
Protein-coding Genes
4696 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| altronate dehydratase | DXC16_00260 | Not Available | Positive | 58159 - 59649 | 54186.1 |
| na+/h+ antiporter nhac family protein | DXC16_00265 | Not Available | Positive | 59795 - 61099 | 46607.5 |
| duf4373 domain-containing protein | DXC16_00270 | Not Available | Negative | 61277 - 62113 | 32154.2 |
| duf340 domain-containing protein | DXC16_00275 | Not Available | Positive | 62732 - 63010 | 10143.0 |
| lysine exporter lyso family protein | DXC16_00280 | Not Available | Positive | 63007 - 63627 | 22330.3 |
| mfs transporter | DXC16_00285 | Not Available | Negative | 63690 - 65351 | 59809.1 |
| cys-trna(pro) deacylase | DXC16_00290 | Not Available | Negative | 65458 - 65943 | 17802.8 |
| excinuclease abc subunit uvra | DXC16_00295 | Not Available | Negative | 65958 - 68786 | 105951.0 |
| lysm peptidoglycan-binding domain-containing protein | DXC16_00300 | Not Available | Positive | 68941 - 70749 | 68473.0 |
| port family protein | DXC16_00305 | Not Available | Positive | 70749 - 71432 | 25734.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

